PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn299441
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family LBD
Protein Properties Length: 201aa    MW: 22039.4 Da    PI: 8.324
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn299441genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26091.31.1e-2815116197
      DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 
                 +C++C+ lr++C ++C+l+p++     +  q++++ +v k+FG+s +l++++a+pe++r+++++sl++eA+ r+ +Pv+Gavg++++++++++q+++++
  Achn299441  15 SCNGCRALRKGCCESCILRPCLewiesARGQSNATLFVSKFFGRSDLLSFIAAVPESKRPALFQSLLFEACGRTVNPVKGAVGLLSTGNWHVCQAAVNT 113
                 6*********************9998666789***************************************************************9988 PP

      DUF260  95 all 97 
                 +l+
  Achn299441 114 VLA 116
                 776 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089118.70214120IPR004883Lateral organ boundaries, LOB
PfamPF031951.0E-2415114IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 201 aa     Download sequence    Send to blast
MIKIIKDKKF KNERSCNGCR ALRKGCCESC ILRPCLEWIE SARGQSNATL FVSKFFGRSD  60
LLSFIAAVPE SKRPALFQSL LFEACGRTVN PVKGAVGLLS TGNWHVCQAA VNTVLAGGTL  120
RPLTSPILTH EASDAFDSPK IWNFQKWCSE ASQRQPYDLK KAAAMLSDSE ESEMVVGFEG  180
GDYGAEKLRA EEPKLLNLFV *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006362058.11e-63PREDICTED: LOB domain-containing protein 38-like
SwissprotQ9FN112e-60LBD37_ARATH; LOB domain-containing protein 37
TrEMBLM1BXU31e-63M1BXU3_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000553933e-63(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA9662490
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67420.11e-61LOB domain-containing protein 37